Moderate Indonesians continue to have a lot of trouble with the concept of difference: http://www.thejakartapost.com/news/2012/09/06/shia-conversion-solution-minister.html
Btw, the idea of moving people around to make things better has been mooted: http://www.thejakartaglobe.com/news/suryadharma-says-he-regrets-shias-rejection-to-be-moved/543037
Some background here: http://www.thejakartapost.com/news/2012/09/05/w-java-s-shiites-wary-following-sampang-killings.html (I dont know much about the local details myself…I have been to Indonesia once for a few days to visit an uncle who lived there, so slightly above average interest in that place, but not enough to know a lot…I am just fishing for insights here).
Btw, what does the Indonesian govt do about the religious beliefs of its Chinese population? Do they all have to be Christian/Muslim/Hindu/Buddhist etc? what choices are considered Kosher?