Takeaways from the golden age of Indian population genetics

There are lots of strange takes on the India Today piece, 4500-year-old DNA from Rakhigarhi reveals evidence that will unsettle Hindutva nationalists. I’m friendly with the author and saw an early draft. So I’m going to address a few things.

The genetic results are becoming more and more clear. A scaffold is building and becoming very firm. In the 2020s there will be a lot of medical genomics in India. But before that, there will be population genetics. Ancient DNA will be the cherry on the cake.

Here’s what genetics tells us. First, a component of South Asian ancestry, especially in North India, and especially in North Indian upper caste groups, seems to be the same as ancient agro-pastoralists who ranged between modern Ukraine and modern Tajikistan. Genetically, these people are very similar to certain peoples of Central and Eastern Europe of this time, though there is a varied dynamic of uptake of local Central Eurasian elements as they ranged eastward.

This ancestral component is often called “steppe.” This ancestral component is a synthesis of ancient European hunter-gatherer, Siberian, and West Asian. The steppe component seems to arrive in Central and South Asia after 2000 BC.

Second, another component of South Asian ancestry is very distinctive to the region. It is deeply but distantly related to branches of humanity which dominate Melanesia and eastern Eurasia, up into Siberia. The magnitude of the distance probably dates to ~50 thousand years ago, when the dominant element of modern humans expanded outward from West Asia, east, north, and west. These people are called “Ancient Ancestral South Indians,” or AASI. Their closest relatives today may be the natives of the Andaman Islands, but this is a very distant relationship.

AASI is the dominant component of what was once called “Ancestral South Indians,” or ASI. It turns out that “ASI” themselves were a compound synthetic population. This was long suspected by many (e.g., David W.). What was ASI a compound of? About ~75 percent of its ancestry was AASI, but the balance seems to have been a West Eurasian component related to farmers from western Iran. We can call this group “farmers.”

With a few samples from outside of the IVC region, and one (or two) samples from within the IVC region, geneticists are converging upon the likelihood that the profile in the greater IVC region before 2000 BC was a compound of these farmers with the AASI. But even within the IVC region, there seems to have been a range of variation in ancestry. The IVC was a huge zone. It may not have been dominated by a single ethnolinguistic group (even today there is the Burusho linguistic isolate in northern Pakistan). Note that the much smaller Mesopotamian civilization was multiethnic, with a聽 non-Semitic south and a Semitic north (Sumer and Akkad).

The key point is that it is very likely the IVC lacked the steppe ancestral component. That it did have AASI component. And, it did have a farmer component with likely ultimate provenance in western Iran. Additionally, there were smaller components derived from pre-steppe Central Eurasian people.

While the steppe people arrived in the last 4,000 years, and at least some of the ancestors of the AASI are likely to have been in South Asia for 40,000 years, the presence of the AASI-farmer synthesis genetically is conditional on when a massive presence of western farmers came to affect the northwestern quarter of South Asia. It seems unlikely to have been before Mehrgarh was settled 8,500 years ago. The genetic inferences to estimate the time of admixture between AASI and farmer are currently imprecise, but it seems likely to have begun at least a few thousand years before 2000 BC.聽 range of 8,500 and 6,000 years ago seems reasonable.

So 4,000 years ago the expanse of the IVC was dominated by a variable mix of farmer and AASI. One can call this “Indus Valley Indian” (IVI).

Just like ASI, there was an earlier abstract construct, “Ancestral North Indian” (ANI). Today it seems that that too was a compound. To be concise, ANI is a synthesis of steppe with IVI. The Kalash of northern Pakistan are very close genetically to ANI. This means that while ASI had West Eurasian ancestry, albeit to a minor extent. And ANI had AASI ancestry, albeit to a minor extent. The main qualitative difference is that ANI had a substantial minority of steppe ancestry.

To a great extent, the algebra of genetic composition across South Asia can be thought of as modulating these three components, farmer, steppe, and AASI.* Consider:

  • Bhumihar people in Bihar tend to have more steppe than typical, but not more farmer than typical, and average amounts of AASI.
  • Sindhi people in Pakistan tend to have lots of farmer, some steppe, and not much AASI.
  • Reddy people in South India have lots of farmer, very little steppe, and average amounts of AASI.
  • Kallar people in South India have some farmer, very little steppe, and lots of AASI.

For details of where I’m getting this, you can look at The Genomic Formation of South and Central Asia for quantities. But as a stylized fact farmer ancestry tends to peak around the Sindh. In Pakistan steppe ancestry increases as you go north. As you go east and south AASI increases pretty steadily, but there are groups further east, such as Jatts and Brahmins, who have a lot of steppe, almost as much as northern Pakistani groups. And curiously you get a pattern where some groups have more steppe and AASI, and less farmer, than is the case to the west (you see this in the Swat valley transect, as steppe & AASI increase in concert).

Going back to the history, by the time the steppe people arrived in South Asia, in the period between 2000 BC and 1000 BC, it may be that the IVI ancestry is what they mixed with predominantly. Though it is likely that the southern and eastern peripheries had “pure” AASI, by the time steppe people spread their culture to these fringes they were already thoroughly mixed with IVI populations, and so already had some AASI ancestry.

In contrast, the farmer populations likely mixed extensively with AASI in situations where the two populations were initially quite distinct.

Please note I have not used the words “Aryan” or “Dravidian.” The reason is that these are modern ethnolinguistic terms. Genetics is arriving at certain truths about population changes and connections, but we don’t have a time machine to go back to the past and determine what language people were speaking 4,000 years ago.

Our inferences rest on supposition, and a shaky synthesis of historical linguistics and archaeology and genetic demography, a synthesis which is unlikely to ever be brought together in one person due to vast chasm of disciplinary method and means.

It is highly likely that the steppe component is associated with Indo-European speaking peoples. Probably Indo-Aryan speaking peoples. The reason is that by historical time, the period after 1000 BC, Iran and Turan seem to already have been dominated by Indo-Iranian peoples. But, in the period around 2000 BC, western Iran was not Indo-Iranian. People like the Guti and the Elamites were not Indo-European, and they were not Semitic. We have some genetic transects which show that steppe ancestry did arrive in parts of Turan and Iran in the period after 2000 BC.

Where did the Dravidian languages come from? We don’t know. They could have been spoken by an AASI group. Or, they could be associated with farmers from the west. We don’t know. Ultimately, we may never know. Unlike Indo-European languages, there are no Dravidian languages outside of South Asia.

Various聽toponymic evidence indicates that Dravidian languages were spoken at least as far north and west as Gujurat. And Brahui exists today in Balochistan. Though I don’t have strong opinions, I think Dravidian languages probably are descended from a group of extinct languages that were present in Neolithic Iran.

Though unlike Indo-Aryan languages, Dravidian exploded onto the scene after a long period of incubation within South Asia, as part of at least one of the language groups dominant with the IVC and pre-IVC societies.

At least that’s my general assessment. I have strong opinions about the genetics. But am much more curious about what others have to say about linguistics and archaeology.

* Some groups, such as Munda and Indo-Aryan groups in Northeast India, have East Asian ancestry. Some groups in coastal Pakistan have African ancestry.

Review: General Shahid Aziz’s Memoir Yeh Khamoshi Kahan Tak

Shahid Aziz retired from the Pakistan army after a long and successful career, reaching the rank of Lieutenant General (3 star general) and serving as DG analysis wing of the ISI, DGMO (director general military operations), CGS (chief of general staff) and corps commander (commanding 4 corps in Lahore). After retirement, he served as chairman of the powerful National Accountability Bureau (NAB), the main anti-corruption watchdog in Pakistan. In spite of having been one of General Musharraf’s closest associates (and related to him by marriage; the daughter of one of Shahid Aziz’s cousins is married to Musharraf’s son) he became increasingly critical of Musharraf after retirement and in 2013 he wrote a book that was highly critical of Musharraf and of Pakistan’s supposedly pro-US policies at that time.

In May 2018 there were several news reports claiming that General Shahid Aziz had left his home last year (or even earlier) to join the Jihad against the West and had been killed, either in Syria or in Afghanistan (General Musharraf was the one who claimed he was killed in Syria, most other reports said Afghanistan). While his family has denied these reports, they have not been able to produce any explanation about where he is if he has not actually died on Jihad. So I decided to read the book. Having read it, I think the combination of naive idealism and PMA-level Islamism found in his book makes it very likely that these reports are true. My review follows (please also read this review by Abdul Majeed Abid as a complementary piece) Continue reading Review: General Shahid Aziz’s Memoir Yeh Khamoshi Kahan Tak

Why this kolaveri di on Indian genetics

I perused through the article linked in Razib’s previous post. I stumbled on this caption embedded in the beginning of the article:

NOT THE SAME: The Indus Valley people lacked the steppe and ancestry that marks many North Indian high castes today (Photograph by Bandeep Singh, for representational purpose only)
I find the association that the prototypical Indian is a high-caste Hindu to be in poor taste.

Genetics stories in India Today

4500-year-old DNA from Rakhigarhi reveals evidence that will unsettle Hindutva nationalists:

The ‘petrous bone’ is an inelegant but useful chunk of the human skull — basically it protects your inner ear. But that’s not all it protects. In recent years, genetic scientists working to extract DNA from ancient skeletons have discovered that, thanks to the extreme density of a particular region of the petrous bone (the bit shielding the cochlea, since you ask), they could sometimes harvest 100 times more DNA from it than from any other remaining tissue.

Now this somewhat macabre innovation may well resolve one of the most heated debates about the history of India.

And, from me, 3 strands of ancestry.

Nothing new for close readers. I would caution

1) Many Hindu nationalists really don’t care and are not perturbed by these findings. I know, because I know them.

2) I don’t know if the paper is going to be published soon. It may, but we’ve been waiting two years now.

The passing

In 1998 Bill Clinton stated:

Today, largely because of immigration, there is no majority race in Hawaii or Houston or New York City. Within five years, there will be no majority race in our largest state, California. In a little more than 50 years, there will be no majority race in the United States. No other nation in history has gone through demographic change of this magnitude in so short a time … [These immigrants] are energizing our culture and broadening our vision of the world. They are renewing our most basic values and reminding us all of what it truly means to be American.

The year 2050, or whatever date you want, is when “whites” will become a “minority.” Both words are in quotes, since what counts as “white” and “minority” matter a great deal in terms of these quantities. Clinton, like many liberal(ish) white Americans, did not look upon that future with dread or anxiety. Rather, he was, and presumably is, hopeful. At the time many people asserted that Bill Clinton was arguably the first American president who was personally comfortable with nonwhites. After all, Vernon Jordan was one of his closest friends.

And yet here are the demographics of the town where Bill & Hillary chose to settle down after the 1990s:

. The racial makeup of the CDP was 91.80% White, 0.94% African American, 0.03% Native American, 5.62% Asian, 0.02% Pacific Islander, 0.52% from other races, and 1.07% from two or more races. Hispanic or Latino of any race were 2.55% of the population.

Bill may look forward to our bright diverse future of 2050, but he lives socially and demographically in 1950. And he’s not alone.

To me, this is the important lacunae left out in Panjak Mishra’s op-ed in The New York Times, The Religion of Whiteness Becomes a Suicide Cult. The op-ed is a testament to the fact that even a sophist must speak the truth now and then. It is certainly true that there is a discomfort and disquiet in the world as the long centuries of white supremacy, in the most literal and descriptive sense, slowly come to a close. Naturally, Mishra points the finger at figures from the past, who can’t dispute his disdain, as well as those individuals such as Donald Trump, whom the readers of The New York Times see as heralds of reaction and regression.

But the truth is that as the “the rising tide of color against white world-supremacy” begins to crest even the “good whites,” the “progressive whites,” will begin to become uncomfortable and unmoored. The noblesse oblige of progressive whites is predicated on the reality and fact of their privilege, of their dominion over the colored races. And yet the reality is that many of these progressive whites show revealed preferences聽which are not much different than non-progressive whites. On the whole, they live amongst other whites, socialize with other whites, and marry other whites.

Having lived in California, around white people who are politically far more liberal than I am, I have a bit of personal experience with how these “revealed preferences” work. Rather than anecdotes, I’ll just point to this article, Ghosts of white people past: witnessing the white flight from an Asian ethnoburb.

The “passing of the great race” is a far bigger story than nationalism, racial or otherwise. It is the expiration of a whole Weltanschauung. An undermining of assumptions. The death of a world civilization, and the birth of a new one.

Sikh-American President?

https://www.facebook.com/NowThisOpinions/videos/vb.301565040380161/2139764439614338/?type=2&theater

Razib mentioned that different generations of immigrant-Americans had different experiences. When I hear the chap above and his Obamaesque accent (plus level of eloquence); it’s difficult to find the parallel in Britain.

The immigration and diaspora experience in Britain is more similar to the 1920’s Eastern and Southern European immigrants. To give a more precise analogy; post 1965 most Indian Americans immigrated as individuals or as families (except maybe the Patels) however in Britain it was almost communal immigration.

My friend’s father (who is a Sikh) moved to Britain in the 50’s/60’s from the Punjab. He was a civil servant in India and it was actually Enoch Powell who thought Indian civil servants could fill the labour gap in post-war Britain. He immigrated with less than 5 pounds (that was the limit they were allowed to bring) and his children are particularly British (half of them have white British spouses which is uncommon for that cohort, even now intermarriage is sub 10%). Even though he immigrated as a young man his friends had also moved and they had essentially formed a friendship cluster. So even though my friend grew up in a very white area she does remember that the family’s social grouping was still fairly Sikh (and competitive as all the parents had started with the same 5 pounds so the competition was on).

The British Asian experience is almost sui generis. For instance Asian-Americans usually denotes East Asians whereas British Asians immediately signified Desis (Orientals was apparently the term used for our more Far Eastern cousins).

As a final note Britain is an extraordinarily class-obsessed society and aesthetics is usually correlated with class. America, at least from this side of the Atlantic, seems a much more balanced society and the aesthetics of the immigrant populations are usually more pleasing. Americans are probably the best-groomed people in the world, on the whole (notwithstanding notable exceptions) and prosperity is linked to beauty.

Mr. Grewal cuts a very impressive profile both with his mannerisms and profile. He really reminds me of a Sikh Obama. Maybe he will run for President since he really does Brown Proud.

On the genetics of Bengal and Southeast Asia

Over at my other weblog, genetics post some readers might have an interest in. I think in the near future I’ll be talking more about the genetics of Southeast Asians and how they were influenced by Indians. Long story short: there’s a significant Indian genetic impact in many areas of Southeast Asia that can’t be ascribed to colonialism. Rather, the spread of Indian culture in the region was probably catalyzed by Indians….

Suno Punjab

We’ve been watching the excellent Suno Chanda. It’s the story of a respectable Muhajir industrialist family in Karachi but features some ethnic characters as well (a Punjabi mother in law and a Pathan Uncle).

Even though I spent formative years in Islamabad the only ethnic language I was exposed to was Pushto, which was the domain of the labourers, house help and security guards. Punjabi was simply non-existent and Urdu & English were the dominant languages. So I haven’t heard much Punjabi and to be honest growing up all the Punjabi neighbours were the “Pakistanis” while the Sindhis, Pathans were the exotics.

So for the first time I’ve really been listening to the Punjabi language in sustained doses.

Udaari and Dastaan also had Punjabi speakers but in Dastan the Muslim Punjabis spoke chaste Urdu while it was the Sikh kidnappers who lapsed into comical Punjabi.

What is rather shocking to me is how Punjabi sounds like a rustic version of Hindustani. A sort of Braj Brasha for the East?

The diminishing writ of Punjabi?

What makes Sindhi a teachable language but Punjabi a foul one?

Little did the opposing party know that this could be expected of any language spoken in Pakistan but Punjabi, for it is considered by our beau monde to be an illiterate version of Urdu owing to the likeness of the two languages. Speaking Punjabi in public is frowned upon and is not used by our nonpareil A-list to even communicate with servants. The current status of this 14-centuries-old language can be gauged by the simple inclination of Asif Ali Zardari to deliver at least some part of his speeches in Sindhi, but the smirks and guffaws that erupt in assemblages of the Pakistan Tehreek-e-Insaf when Imran Khan utters a single phrase in Punjabi.

Something has happened in the history of Punjabi whereby Hindustani speakers pushed Westward into the Lahore region (Amritsar is essentially a Lahori suburb). As an aside in the “Sacred Geography” of India; are there any Hindu holy sites in present-day Pakistan?

 

What is interesting is that all the “Lahnda” (Western) dialects of of Punjabi are in Pakistan and all the Eastern dialect (except for the prestigious and no doubt Hindustani influence Majhi) are in India. Continue reading Suno Punjab

Brown Pundits